dir.c: remove an implicit dependency on the_index in pathspec code

dir.c: remove an implicit dependency on the_index in pathspec code

Make the match_patchspec API and friends take an index_state instead
of assuming the_index in dir.c. All external call sites are converted
blindly to keep the patch simple and retain current behavior.
Individual call sites may receive further updates to use the right
index instead of the_index.

Signed-off-by: Nguyễn Thái Ngọc Duy <pclouds@gmail.com>
Signed-off-by: Junio C Hamano <gitster@pobox.com>